Publications

Google Scholar Profile

ORCID page

The book:
Isik, F., J. Holland, and C. Maltecca. 2017. Genetic Data Analysis for Plant and Animal Breeding. Springer, NY.

Code and data supplement to the book

Refereed Journal Articles

Refereed Book Chapters, Conference Proceedings, and Policy Papers

Refereed Journal Articles

Sarinelli, J.M., J.P. Murphy, P. Tyagi, J.B. Holland, J.W. Johnson, M. Mergoum, R.E. Mason, A. Babar, S. Harrison, R. Sutton, C.A. Griffey, G. Brown-Guedira. 2019. Training population selection and use of fixed effects to optimize genomic predictions in a historical USA winter wheat panel. Theoretical and Applied Genetics (accepted).

Yang, C. J., L. F. Samayoa, P. J. Bradbury, B. A. Olukolu, W. Xue, A. M. York, M. R. Tuholski, W. Wang, L. L. Daskalska, M. A. Neumeyer, J. J. Sanchez-Gonzalez, M. C. Romay, J. C. Glaubitz, Q. Sung, E. S. Buckler, J. B. Holland, and J F. Doebley. 2019. The genetic architecture of teosinte catalyzed and constrained maize domestication. Proc. Natl. Acad. Sci. USA 116:5643-5652.

Guo, T., X. Yu, X. Li, H. Zhang, C. Zhu, S. Flint-Garcia, M.D. McMullen, J.B. Holland, S.J. Szalma, R.J. Wisser, J. Yu. 2019. Optimal designs for genomic selection in hybrid crops. Molecular Plant 12:390-401.

Morales, L., C.T. Zila, D.E. Moreta Mejía, M. Montoya Arbelaez, P.J. Balint-Kurti, J.B. Holland, R.J. Nelson. 2019. Diverse components of resistance to Fusarium verticillioides infection and fumonisin contamination in four maize recombinant inbred families. Toxins 11:86

Stagnati, L., A. Lanubile, L.F. Samayoa, M. Bragalanti, P. Giorni, M. Busconi, J.B. Holland, and A. Marocco. 2019. A genome wide association study reveals markers and genes associated with resistance to Fusarium verticillioides infection of seedlings in a maize diversity panel. G3: Genes, Genomes, Genetics 9:571-579

Morales, L., T.P. Marino, A.J. Wenndt, J.Q. Fouts, J. Holland, and R. Nelson. 2018. Dissecting symptomatology and fumonisin contamination produced by Fusarium verticillioides in maize ears. Phytopathology. 108:1475-1485

Holland, J.B. 2018. Plant genetics: Two steps on the path to maize adaptation. Current Biology 28:PR1098-R1101.

Al Khalifah, N., D.A. Campbell, C.M. Falcon, J.M. Gardiner, N.D. Miller, M.C. Romay, R. Walls, R. Walton, C.-T. Yeh, M. Bohn, J. Bubert, E.S. Buckler, I. Ciampitti, S. Flint-Garcia, M.A. Gore, C. Graham, C. Hirsch, J.B. Holland, D. Hooker, S. Kaeppler, J. Knoll, N. Lauter, E.C. Lee, A. Lorenz, Jonathan P Lynch, Stephen P Moose, Seth C Murray, Rebecca Nelson, Torbert Rocheford, Oscar Rodriguez, James C Schnable, Brian Scully, Margaret Smith, Nathan Springer, Peter Thomison, Mitchell Tuinstra, Randall J Wisser, Wenwei Xu, David Ertl, Patrick S Schnable, Natalia De Leon, Edgar P Spalding, Jode Edwards, and Carolyn J Lawrence-Dill. 2018. Maize Genomes to Fields: 2014 and 2015 field season genotype, phenotype, environment, and inbred ear image datasets. BMC Research Notes 11:452.

Ovenden, B., A. Milgate, L.J. Wade, G.J. Rebetzke, and J.B. Holland. 2018. Accounting for genotype-by-environment interactions and residual genetic variation in genomic selection for water-soluble carbohydrate concentration in wheat. G3: Genes, Genomes, Genetics 8:.

Wills, D.A., Z. Fang, A.M. York, J.B. Holland, and J.F. Doebley. 2018. Defining the Role of the MADS-Box Gene, Zea Agamous-like1, a Target of Selection During Maize Domestication. Journal of Heredity 109:333-338.

J.J. Sánchez González, J.A. Ruiz Corral, G. Medina García, G. Ramírez Ojeda, L. de la Cruz Larios, J.B. Holland, R. Miranda Medrano, and G.E. García Romero. 2018. Ecogeography of teosinte. PlosOne 13:e0192676.

J.L. Gage, D. Jarquin, C. Romay, A. Lorenz, E.S. Buckler, S. Kaeppler, N. Alkhalifah, M. Bohn, D.A. Campbell, J. Edwards, D. Ertl, S. Flint-Garcia, J. Gardiner, B. Good, C.N. Hirsch, J. Holland, D.C. Hooker, J. Knoll, J. Kolkman, G. Kruger, N. Lauter, C.J. Lawrence-Dill, E. Lee, J. Lynch, S.C. Murray, R. Nelson, J. Petzoldt, T. Rocheford, J. Schnable, P.S. Schnable, B. Scully, M. Smith, N. M Springer, S. Srinivasan, R. Walton, T. Weldekidan, R.J Wisser, W. Xu, J. Yu, Natalia de Leon. 2017. The effect of artificial selection on phenotypic plasticity in maize. Nature communications 8:1348

Ovenden, B., A. Milgate, C. Lisle, L.J. Wade, G.J. Rebetzke, and JB Holland. 2017. Selection for water-soluble carbohydrate accumulation and investigation of genetic× environment interactions in an elite wheat breeding population. Theoretical and Applied Genetics 130:2445-2461

Swarts, K., R.M. Gutaker, B. Benz, M. Blake, R. Bukowski, J. Holland, M. Kruse-Peeples, N. Lepak, L. Prim, M.C. Romay, J. Ross-Ibarra, J.J. Sanchez-Gonzalez, C. Schmidt, V.J. Schuenemann, J. Krause, R.G. Matson, D. Weigel, E.S. Buckler, H.A. Burbano. 2017. Genomic estimation of complex traits reveals ancient maize adaptation to temperate North America. Science 357:512-515.

Ovenden, B. A Milgate, LJ Wade, GJ Rebetzke, JB Holland. 2017. Genome-wide associations for water-soluble carbohydrate concentration and relative maturity in wheat using SNP and DArT marker arrays. G3: Genes, Genomes, Genetics 7:2821-2830

Bian, Y., and J.B. Holland. 2017. Enhancing genomic prediction with genome-wide association studies in multiparental maize populations. Heredity 118:585–593.

Rebetzke, G.J., R.A. Richards, and J.B. Holland. 2017. Population extremes for assessing trait value and correlated response of genetically complex traits. Field Crops Research 201:122-132.

Jamann, T., S. Sood, R.J. Wisser, and J.B. Holland. 2017. Evaluation of highly multiplexed PCR combined with semi-conductor-based sequencing for targeted resequencing in maize. PlosOne http://dx.doi.org/10.1371/journal.pone.0168910.

 

Andres, RJ., V. Coneva, M.H Frank, J.R Tuttle, L.F. Samayoa, S.-W. Han, B. Kaur, L.Zhu, H. Fang, D.T Bowman, M. Rojas-Pierce, C.H Haigler, D.C Jones, J.B. Holland, D.H. Chitwood, and V. Kuraparthy. 2016. Modifications to a LATE MERISTEM IDENTITY-1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.). Proceedings of the National Academy of Sciences 114:E57-E66.

Olukolu, B., Y. Bian, B. De Vries, W. Tracy, R. Wisser, J. Holland, and P. Balint-Kurti. 2016. The genetics of leaf flecking in maize and its relationship to plant defense and disease resistance. Plant Physiology 172:1787-1803.

Xue, S., P.J. Bradbury, T. Casstevens, and J.B. Holland. 2016. Genetic architecture of domestication-related traits in maize. Genetics 204:99-113.

Horne, D.W., M.S. Eller, and J.B. Holland. 2016. Responses to recurrent index selection for reduced Fusarium ear rot and lodging and for increased yield in maize. Crop Science 56:85-94.

Nelson, P.T., M.D. Krakowsky, N.D. Coles, J.B. Holland, D.M. Bubeck, J.S.C. Smith, and M.M. Goodman. 2016. Genetic characterization of the North Carolina State University maize lines. Crop Science 56:259-275.

 

Bian, Y., and J.B. Holland. 2015. Ensemble learning of QTL models improves prediction of complex traits. G3: Genes, Genomes, Genetics 5:2073-2084.

Pratt, R.C., J.B. Holland, P.J. Balint-Kurti, N.D. Coles, J. Zwonitzer, M.A. Casey, and M.D. McMullen. 2015. Registration of the Ki14 × B73 recombinant inbred mapping population of maize. Journal of Plant Registrations 9:262–265.

Ogut, F., Y. Bian, P.J. Bradbury, and J.B. Holland. 2015. Joint multiple family linkage analysis predicts within-family variation better than single family analysis of the maize nested association mapping population. Heredity 114:552-563.

Samayoa, L., R. Malvar, B.A. Olukolu, J.B. Holland, and A. Butrón. 2015. Genome-wide association study reveals a set of genes associated with resistance to the Mediterranean corn borer (Sesamia nonagrioides L.) in a maize diversity panel. BMC Plant Biology 15:35.

Teixeira, J.E.C., T. Weldekidan, N. de Leon, S. Flint-Garcia, J.B. Holland, N. Lauter, S.C. Murray, W. Xu, D.A. Hessel, A.E. Kleintop, J.A. Hawk, A. Hallauer, R.J. Wisser. 2015. Hallauer’s Tusón: a decade of selection for tropical-to-temperate phenological adaptation in maize. Heredity 114: 229-240.

 

Zila, C.T., F. Ogut, M.C. Romay, C.A. Gardner, E.S. Buckler, and J.B. Holland. 2014. Genome-wide association study of Fusarium ear rot disease in the U.S.A. maize inbred line collection. BMC Plant Biology 14:372.

Bian, Y, Q. Yang, P. Balint-Kurti, R.J. Wisser, and J.B. Holland. 2014. Sensitivity of joint linkage and genome-wide association analyses of maize southern leaf blight resistance to data inputs. BMC Genomics 15:1068.

Hirsch, C.N., S.A. Flint-Garcia, T.M. Beissinger, S.R. Eichten, S. Deshpande, K. Barry, M.D. McMullen, J.B. Holland, E.S. Buckler, N.M. Springer, C.R. Buell, N. de Leon, and S.M. Kaeppler. 2014. Insights into the effects of long-term artificial selection on seed size in maize. Genetics 198:409-421.

Olukolu, B.A., G.-F. Wang, V. Vontimitta, B.P. Venkata, S. Marla, J. Ji, E. Gachomo, K. Chu, A. Negeri, J. Benson, R. Nelson, P. Bradbury, D. Nielsen, J.B. Holland, P.J. Balint-Kurti, and G. Johal. 2014. A genome-wide association study of the maize hypersensitive defense response identifies genes that cluster in related pathways. PlosGenetics 10: e1004562. doi: 10.1371/journal.pgen.1004562

Peiffer, J.A., M.C. Romay, M.A. Gore, S.A. Flint-Garcia, Z. Zhang, M.J. Millard, C.A.C. Gardner, M.D. McMullen, J.B. Holland, P.J. Bradbury, and E.S. Buckler. 2014. The genetic architecture of maize height. Genetics 196:1337-1356.

Santa-Cruz, J.H., K.L. Kump, C. Arellano, M.M. Goodman, M.D. Krakowsky, J.B. Holland, and P.J. Balint-Kurti. 2014. Yield effects of two Southern leaf blight resistance QTL in near-isogenic maize hybrids. Crop Science 54:882-894.

 

Zila, C.T., L.F. Samayoa, R. Santiago, A. Butrón, and J.B. Holland. 2013. A genome-wide association study reveals genes associated with Fusarium ear rot resistance in a maize core diversity panel. G3: Genes, Genomes, Genetics 3:2095-2104.

Romay, M.C., M. Millard, J.C. Glaubitz, J.A. Peiffer, K.L. Swarts, T.M. Casstevens, R.J. Elshire, C. B. Acharya, S.E. Mitchell, S. Flint-Garcia, M.D. McMullen, J.B Holland, ES. Buckler, and C. Gardner. 2013. Comprehensive genotyping of the USA national maize inbred seed bank. Genome Biology 14:R55.

Willcox, M.C., G.L. Davis, M.L.Warburton, G.L. Windham, H.K. Abbas, J. Betrán, J.B. Holland, and W.P. Williams. 2013. Confirming quantitative trait loci for aflatoxin resistance from Mp313E in different genetic backgrounds. Molecular Breeding 32:15-26.

 

Olukolu, B., A. Negeri, R. Dhawan, B. Venkata, P. Sharma, A. Garg, E. Gachomo, S. Marla, K. Chu, A. Hasan, J. Ji, S. Chintamanani, J. Green, C.-R. Shyu, R.J. Wisser, J.B. Holland, G. Johal, and P. Balint-Kurti. 2012. A connected set of genes associated with programmed cell death implicated in controlling the hypersensitive response in maize. Genetics 193:609-620.

Veturi, Y., K. Kump, E. Walsh, O. Ott, J. Poland, J. M. Kolkman, P. J. Balint-Kurti, J. B. Holland, and R. J. Wisser. 2012. Multivariate mixed linear model analysis of longitudinal data: an information-rich statistical technique for analyzing plant disease resistance. Phytopathology 102:1016-1025.

 Hizbai, B.T., K.M. Gardner, C.P. Wight, R.K. Dhanda, S.J. Molnar, D. Johnson, J. Frégeau-Reid, W. Yan, B.G. Rossnagel, J.B. Holland, and N.A. Tinker. 2012. QTLs affecting oil content, oil composition, and other agronomically important traits in oat (Avena sativa L.). The Plant Genome 5:164-175.

Hung, H.-Y. and J.B. Holland. 2012. Diallel analysis of resistance to Fusarium ear rot and fumonisin contamination in maize. Crop Science 52:2173-2181.

 Hung, H.-Y., LM. Shannon, F. Tian, P. Bradbury, C. Chen, S.A. Flint-Garcia, M.D. McMullen, D. Ware, E.S. Buckler, J.F. Doebley, and J.B. Holland. 2012. ZmCCT and the genetic basis of daylength adaptation underlying the post-domestication spread of maize. Proceedings of the National Academy of Sciences 109:E1913-E1921.

 Chia, J.-M., C. Song, P.J. Bradbury, D. Costich, N. de Leon, J. Doebley, R.J. Elshire, B. Gaut, L. Geller, J.C. Glaubitz, M. Gore, K.E. Guill, J. Holland, M.B. Hufford, J. Lai, M. Li, X. Liu, Y. Lu, R. McCombie, R. Nelson, J. Poland, B.M. Prasanna, T. Pyhäjärvi, T. Rong, R.S. Sekhon, Q. Sun, M.I. Tenaillon, F. Tian, J. Wang, X. Xu, Z. Zhang, S.M. Kaeppler, J. Ross-Ibarra, M.D. McMullen, E.S. Buckler, G. Zhang2, Y. Xu, D. Ware. 2012. Maize HapMap 2 identifies extant variation from a genome in flux. Nature Genetics 44:803-807.

 Cook, J.P., M.D. McMullen, J.B. Holland, F. Tian, P. Bradbury, J. Ross-Ibarra, E.S. Buckler, and S.A. Flint-Garcia.  2012. Genetic architecture of maize kernel composition in the nested association mapping and inbred association panels.  Plant Physiology 158: 824-834.

Hung, H.-Y., C. Browne, K. Guill, N. Coles, M. Eller, A. Garcia, N. Lepak, S. Melia-Hancock, M. Oropeza-Rosas, S. Salvo, N. Upadyayula, E.S. Buckler, S. Flint-Garcia, M.D. McMullen, T.R. Rocheford, and J.B. Holland. 2012. The relationship between parental genetic or phenotypic divergence and progeny variation in the maize Nested Association Mapping population. Heredity 108:490–499.

 

Bloom, J.C., and J.B. Holland. 2011. Genomic localization of the maize cross-incompatibility gene, Gametophyte factor 1 (ga1). Maydica 56:379-387. Online: www.maydica.org/articles/56_379.pdf

 Brown, P.J., N. Upadyayula, G. Mahone, F. Tian, P.J. Bradbury, S.M. Myles, J.B. Holland, M.D. McMullen, E.S. Buckler, and T.R. Rocheford. 2011. Distinct genetic architectures for male and female inflorescence traits of maize. PLoS Genetics 7:e1002383.

 Holland, J.B., and N.D. Coles. 2011. QTL controlling masculinization of ear tips in a maize (Zea mays L.) intraspecific cross. G3: Genes, Genomes, Genetics 1:337-341.

Sánchez G., J.J., L. De La Cruz, V.A. Vidal M., J. Ron P., S. Taba, F. Santacruz-Ruvalcaba, S. Sood, J.B. Holland, J.A. Ruíz, S. Carvajal, F. Aragón, V.H. Chávez, M.M. Morales, and R. Barba-González. 2011. Three new teosintes (Zea spp., Poaceae) from México. American Journal of Botany 98:1537–1548.

 Avendaño López, A.N., J.J. Sánchez González, J.A. Ruíz Corral, L. De La Cruz Larios, F. Santacruz-Rubalcava, C.V. Sánchez Hernández, and J. B. Holland. 2011. Seed dormancy in Mexican teosinte. Crop Science 51:2056-2066.

 Jumbo, M., T. Weldekidan, J.B. Holland, and J.A. Hawk. 2011. Comparison of conventional, modified single seed descent, and doubled haploid breeding methods for maize inbred line development using GEM breeding crosses. Crop Science 51:1534-1543.

Wisser, R.J., P.J. Balint-Kurti., and J.B. Holland. 2011. A novel genetic framework for studying response to artificial selection. Plant Genetic Resources 9:281-283.

Negeri, A.T., N.D. Coles, J.B. Holland, and P.J. Balint-Kurti. 2011. Mapping of QTL controlling southern leaf blight resistance by disconnected and joint multiple population analysis in three connected recombinant inbred line populations. Crop Science 51:1571-1579.

Coles, N.D., C.T. Zila, and J.B. Holland. 2011. Functional allelic variation at key photoperiod response QTL in maize. Crop Science 51:1036-1049.

Wisser, R.J., J.M. Kolkman, M.E. Patzoldt, J.B. Holland, J. Yu, M. Krakowsky, R.J. Nelson, and P.J. Balint-Kurti. 2011. Multivariate analysis of maize disease resistances suggests a pleiotropic genetic basis and implicates a glutathione S-transferase gene. Proceedings of the National Academy of Sciences 108:7339-7344.

Kump, K.L, P.J. Bradbury, E.S. Buckler, A.R. Belcher, M. Oropeza-Rosas, R.J. Wisser, J.C. Zwonitzer, S. Kresovich, M.D. McMullen, D. Ware, P.J. Balint-Kurti, and J.B. Holland. 2011. Genome-wide association study of quantitative resistance to Southern leaf blight in the maize nested association mapping population. Nature Genetics 43:163-168.

 Tian, F., P.J. Bradbury, P.J. Brown, Q. Sun, S. Flint-Garcia, T.R. Rocheford, M.D. McMullen, J.B. Holland, and E.S. Buckler. 2011. Genome-wide association study of leaf architecture in the maize nested association mapping population. Nature Genetics 43:159-162.

 

Kump, K.L., J.B. Holland, M.T. Jung, P. Wolters, and P.J. Balint-Kurti. 2010. Joint analysis of near isogenic and recombinant inbred line populations yields precise positional estimates for QTL. Plant Genome 3:142-153.

Eller, M.S., G.A. Payne, and J.B. Holland. 2010. Selection for reduced Fusarium ear rot and fumonisin content in advanced backcross maize lines and their topcross hybrids. Crop Science 50:2249-2260.

 Gonzalo, M., T.J. Vyn, J.B. Holland, and L.M. McIntyre. 2010. Direct mapping of density response in recombinant inbred lines of maize (Zea mays L.). Heredity 104:583–599.

Holland, J.B., and P.T. Nelson. 2010 Dedication: Major M. Goodman, maize geneticist and breeder. Plant Breeding Reviews 33:1-29.

Zwonitzer, J.C., N.D. Coles, M.D. Krakowsky, C. Arellano, J.B. Holland, M.D. McMullen, R.C. Pratt, and P.J. Balint-Kurti. 2010. Mapping resistance quantitative trait loci for three foliar diseases in a maize recombinant inbred line population—Evidence for multiple disease resistance? Phytopathology 100:72-79.

Coles, N.D., M.D. McMullen, P.J. Balint-Kurti, R.C. Pratt, and J.B. Holland. 2010. Genetic control of photoperiod sensitivity in maize. Genetics 184:799-812.

Yan, W., and J.B. Holland. 2010. A heritability-adjusted GGE biplot for test environment evaluation. Euphytica 171:355-369.

 

Wooten, D.R., D.P. Livingston, J.H. Lyerly, J.B. Holland, E.N. Jellen, D.S. Marshall, and J.P. Murphy. 2009. Quantitative trait loci and epistasis for oat winter hardiness component traits. Crop Science 49:1989-1998.

Buckler, E.S., J. B. Holland, P. Bradbury, C. Acharya, P. Brown, C. Browne, E. Ersoz, S. Flint-Garcia, A. Garcia, J. C. Glaubitz, M. Goodman, C. Harjes, K. Guill, D. Kroon, S. Larsson, N. Lepak, H. Li, S. E. Mitchell, G. Pressoir, J. Peiffer, M. Oropeza Rosas, T. Rocheford, C. Romay, S. Romero, S. Salvo, H. Sanchez Villeda, Q. Sun, F. Tian, N. Upadyayula, D. Ware, H. Yates, J. Yu, Z. Zhang, S. Kresovich, and M.M. McMullen. 2009. The genetic architecture of maize flowering time. Science 325:714-728.

McMullen, M.M., S. Kresovich, H. Sanchez Villeda, P. Bradbury, H. Li, Q. Sun, S. Flint-Garcia, J. Thornsberry, C. Acharya, C. Bottoms, P. Brown, C. Browne, M. Eller, K. Guill, C. Harjes, D. Kroon, N. Lepak, S. E. Mitchell, B. Peterson, G. Pressoir, S. Romero, M. Oropeza Rosas, S. Salvo, H. Yates, M. Hanson, E. Jones, S. Smith, J. C. Glaubitz, M. Goodman, D. Ware, J.B. Holland, and E.S. Buckler. 2009. Genetic properties of the maize nested association platform. Science 325:737-740.

 

Eller, M.S., L.A. Robertson-Hoyt, G.A. Payne, and J.B. Holland. 2008. Grain yield and Fusarium ear rot of maize hybrids developed from lines with varying levels of resistance. Maydica 53:231-237.

Van Esbroeck, G.A., J.A. Ruiz Corral, J.J. Sanchez Gonzalez, and J.B. Holland. 2008. A comparison of leaf appearance rates among teosinte, maize landraces, and modern maize. Maydica 53:117-123.

Eller, M.S., G.A. Payne, and J.B. Holland. 2008. Breeding for improved resistance to fumonisin contamination in maize. Toxin Reviews 27:371-389.

Nelson, P.T., N.D. Coles, J.B. Holland, D.M. Bubeck, S. Smith, and M.M. Goodman. 2008. Molecular characterization of maize inbreds with expired U.S. Plant Variety Protection. Crop Science 48:1673-1685.

Ruiz Corral, J.A., N. Durán Puga, J.J. Sánchez González, J. Ron Parra, D.R. González Eguiarte, J.B. Holland, and G.M. García. 2008. Climatic adaptation and ecological descriptors of 42 Mexican maize (Zea mays L.) races. Crop Science 48:1502-1512.

Yu, J., J.B. Holland, M.D. McMullen, and E.S. Buckler. 2008. Genetic design and statistical power of nested association mapping in maize. Genetics 178:539-551.

Wooten, D.R., D.P. Livingston, J.B. Holland, D.S. Marshall, and J.P. Murphy. 2008. Quantitative trait loci and epistasis for crown freeze tolerance in the Kanota x Ogle hexaploid oat mapping population. Crop Science 48:149-157.

 

Robertson-Hoyt, L.A., C.E. Kleinschmidt, D.G. White, G.A. Payne, C.M. Maragos, and J.B. Holland. 2007. Relationships of resistance to Fusarium ear rot and fumonisin contamination with agronomic performance of maize. Crop Science 47:1770-1778.

Balint-Kurti, P.J., J.C. Zwonitzer, R.J. Wisser, M. Oropeza-Rosas, J. Holland and S.J. Szalma. 2007. Precise mapping of quantitative trait loci for resistance to Southern leaf blight, Caused by Cochliobolus heterostrophus Race O, and flowering time using advanced intercross maize lines. Genetics 176:645-657.

Krakowsky, M.D., M. Lee, and J.B. Holland. 2007. Genotypic correlation and multivariate QTL analyses for cell wall components and resistance to stalk tunneling by the European corn borer in maize. Crop Sci 47:485-488.

Holland, J.B. 2007. Genetic architecture of complex traits in plants. Current Opinion in Plant Biology 10:156-161.

Jines, M.P., P.J. Balint-Kurti, L.A. Robertson-Hoyt, T. Molnar, J.B. Holland, and M.M. Goodman. 2007. Mapping resistance to southern corn rust in a semi-tropical recombinant inbred line topcross population. Theoretical and Applied Genetics 114:659-667.

Gonzalo, M., T.J. Vyn, J.B. Holland, and L.M. McIntyre. 2007. Mapping reciprocal effects and interactions with plant density stress in Zea mays L. Heredity 99:14-30.

Szalma, S.J., B.M. Hostert, J.R. LeDeaux, C.W. Stuber, and J.B. Holland. 2007. QTL mapping with near-isogenic lines in maize. Theoretical and Applied Genetics 114:1211-1228.

Robertson-Hoyt, L.A., J. Betrán, G.A. Payne, D.G. White, T. Isakeit, C.M. Maragos, T.L. Molnár, and J.B. Holland. 2007. Relationships among resistances to Fusarium and Aspergillus ear rots and contamination by fumonisin and aflatoxin in maize. Phytopathology 97:311-317.

 

Balint-Kurti, P.J., M.D. Krakowsky, M.P. Jines, L.A. Robertson, T.L. Molnár, M.M. Goodman, and J.B. Holland. 2006. Identification of quantitative trait loci for resistance to southern leaf blight and days to anthesis in a maize recombinant inbred population. Phytopathology 96:1067-1071.

Robertson-Hoyt, L.A., M.P. Jines, P.J. Balint-Kurti, C.E. Kleinschmidt, D.G. White, G.A. Payne, C.M. Maragos, T.L. Molnar, and J.B. Holland. 2006. QTL mapping for Fusarium ear rot and fumonisin contamination resistance in two maize populations. Crop Science 46:1734-1743.

Long, J, J.B. Holland, G.P. Munkvold, and J.-L. Jannink. 2006. Responses to selection for partial resistance to crown rust in oat. Crop Science 46:1260-1265.

Gonzalo, M., T.J. Vyn, J.B. Holland, and L.M. McIntyre. 2006. Mapping density response in maize: a direct approach for testing genotype and treatment interactions. Genetics 173:331-348.

Balint-Kurti, P., M. Blanco, M. Millard, S. Duvick, J. Holland, M. Clements, R. Holley, M.L. Carson, and M.M. Goodman. 2006. Registration of 20 GEM Breeding families adapted for the Southern US. Crop Science 46:996-998.

Tarter, J.A., and J.B. Holland. 2006. Gains from selection during the development of semiexotic inbred lines from Latin American maize accessions. Maydica 15:51-23.

Holland, J.B., P.K. Bretting, D.M. Bubeck, A.J. Cardinal, R.N. Holley, and D.V. Uhr. 2006. Major M. Goodman: A laudation. Maydica 51:3-13.

Holland, J.B. 2006. Estimating genotypic correlations and their standard errors using multivariate restricted maximum likelihood estimation in SAS Proc MIXED. Crop Science 46:642-654.

Yu, J., G. Pressoir, W.H. Briggs, I.V. Bi, M. Yamasaki, J.F. Doebley, M.D. McMullen, B.S. Gaut, J.B. Holland, S. Kresovich, and E.S. Buckler. 2006. A unified mixed-model method for association mapping accounting for multiple levels of relatedness. Nature Genetics 38:203-208.

Robertson, L.A., C.E. Kleinschmidt, D.G. White, G.A. Payne, C.M. Maragos, and J.B. Holland. 2006. Heritabilities and correlations of Fusarium ear rot resistance and fumonisin contamination resistance in two maize populations. Crop Science 46:353-361.

Zhao, W., P. Canaran, R. Jurkuta, T. Fulton, J. Glaubitz, E. Buckler, J. Doebley, B. Gaut, M. Goodman, J. Holland, S. Kresovich, M. McMullen, L. Stein, D. Ware. 2006. Panzea: a database and resource for molecular and functional diversity in the maize genome. Nucleic Acids Research 34:D752–D757.

 

Tarter, J.A., M.M. Goodman, and J.B. Holland. 2004. Recovery of exotic alleles in semiexotic maize inbreds derived from crosses between Latin American accessions and a temperate line. Theor. Appl. Genet. 109:609-617.

 

Tarter, J.A., M.M. Goodman, and J.B. Holland. 2003. Testcross performance of semiexotic inbred lines derived from Latin American maize accessions. Crop Science 43:2272-2278.

Helland, S.J., and J.B. Holland. 2003. Genome-wide genetic diversity among components does not cause cultivar blend response. Crop Science 43:1618-1627.

Holland, J.B., and M.M. Goodman. 2003. Combining ability of tropical maize with isogenic Bt and conventional testers.  Maydica 48:1-8.

Holland, J.B., W.E. Nyquist, and C.T. Cervantes-Martinez. 2003. Estimating and interpreting heritability for plant breeding: An update. Plant Breeding Reviews 22:9-111.

 

Holland, J.B., Å. Bjørnstad, K.J. Frey, M. Gullord, and D.M. Wesenberg. 2002. Recurrent selection for broad adaptation affects stability of oat. Euphytica 126:265-274.

Holland, J.B., V.A. Portyanko, D.A. Hoffman, and M. Lee. 2002. Genomic regions controlling photoperiod and vernalization responses in oat.  Theor. Appl. Genet. 105:113-126.

Cox, T.S., M. Bender, C. Picone, D. L. Van Tassel, J.B. Holland, E.C. Brummer, B.E. Zoeller, A.H. Paterson, and W. Jackson. 2002. Breeding perennial grain crops. Crit. Rev. Plant Sci. 21:59-91.

Cervantes-Martinez, C.T., K.J. Frey, P.J. White, D.M. Wesenberg, and J.B. Holland. 2002. Correlated responses to selection for greater b-glucan content in two oat populations.  Crop Sci. 32:730-738.

 

Holland, J.B., S.J. Helland, N. Sharopova, and D.C. Rhyne. 2001. Sequence length polymorphism of exon, intron, promoter, and SSR gene regions in maize and oat. Genome 44: 1065-1075.

Holland, J.B., K.J. Frey, and E.G. Hammond. 2001. Correlated responses of fatty acid composition, grain quality, and agronomic traits to nine cycles of recurrent selection for increased oil content in oat. Euphytica 122:69-79.

Helland, S.J., and J.B. Holland. 2001. Blend response and stability and cultivar blending ability in oat. Crop Sci 41:1689-1696.

Holland, J.B., and G.P. Munkvold. 2001. Genetic relationships of crown rust resistance, grain yield, and grain quality in oat. Crop Science 41:1041-1050.

Cervantes-Martinez, C.T., K.J. Frey, P.J. White, D.M. Wesenberg, and J.B. Holland. 2001. Selection for greater b-glucan content in oat grain.  Crop Sci. 41:1085-1091.

Holland, J.B. Epistasis and plant breeding. 2001. Plant Breed. Rev. 21:27-92.

Portyanko, V.A., D.A. Hoffman, M. Lee, and J.B. Holland. 2001. A linkage map of hexaploid oat based on a grass anchor DNA clones and its relationship to other oat  maps. Genome 44:249-265.

Kremer, C.A., M. Lee, and J.B. Holland. 2001. A restriction fragment length polymorphism based linkage map of a diploid Avena recombinant inbred line population. Genome 44:192-204.

 

Holland, J.B., Å. Bjørnstad, K.J. Frey, M. Gullord, D.M. Wesenberg, and T. Buraas. 2000. Recurrent selection in oat for adaptation to diverse environments. Euphytica 113:195-205.

 

Frey, K.J. and J.B. Holland.  1999.  Nine cycles of recurrent selection for increased groat oil content in oat.  Crop Sci. 39:1636-1641.

Holland, J.B. and E.C. Brummer.  1999.  Cultivar effects on oat-berseem clover intercrops.  Agron. J. 91:321-329.

Hoi, S.W., J.B. Holland, and E.G. Hammond.  1999.  Heritability of lipase activity on oat caryopses. Crop Sci. 39:1055-1059

 

Holland, J.B.  1998.  EPISTACY: A SAS program for detecting two-locus epistatic interactions using genetic marker information.  J. Hered. 89:374-375.

 

Palmer, R.G., J.B. Holland, and K.S. Lewers.  1997.  Recombination values for the Ms6-W1 chromosome region in different genetic backgrounds in soybean.  Crop Sci. 38:293-296.

Holland, J.B., D.V. Uhr, D. Jeffers, and M.M. Goodman.  1997.  Inheritance of resistance to southern corn rust in Tropical by Corn Belt maize populations.  Theor. Appl. Genet. 96:232-241.

Holland, J.B., H.S. Moser, L.S. O’Donoughue, and M. Lee. 1997. QTLs and epistasis associated with vernalization responses in oat.  Crop Sci. 37:1306-1316.

 

Holthaus, J.F., J.B. Holland, P.J. White, and K.J. Frey.  1996.  Inheritance of b-glucan in oat grain.  Crop Sci. 36:567-572.

Holland, J.B., M.M. Goodman, and F. Castillo-Gonzalez.  1996.  Identification of agronomically superior Latin American maize accessions via multi-stage evaluations.  Crop Sci. 36:778-784.

 

Holland, J.B. and M.M. Goodman.  1995.  Combining ability of tropical maize accessions with US germplasm.  Crop Sci. 35:767-773.

 

Holland, J.B. and E.T. Bingham.  1994.  Genetic improvement for yield and fertility of alfalfa cultivars representing different eras of breeding.  Crop Sci. 34:953-957.

 

Refereed Book Chapters, Conference Proceedings, and Policy Papers

Samayoa, L.F., J. Andres, J.C. Dunne, and J.B. Holland. 2018. Harnessing maize biodiversity. p. 335-366. In: Bennetzen, J., S. Flint-Garcia, C. Hirsch, and R. Tuberosa (Eds.) The Maize Genome. Springer, Switzerland.

 

Holland, J.B. 2015. MAGIC Maize: A new resource for plant genetics. (Research highlight on Della’Aqua et al. 2015 Genome Biology 16:167) Genome Biology 16:163.

 

Balint-Kurti, P.J., and J.B. Holland. 2015. New insight into a complex plant–fungal pathogen interaction. Nature Genetics 47:101-103. (‘News and views’ commentary on Zuo et al 2015 Nature Genetics 47:151-157).

 

Jamann, T.M., P.J. Balint-Kurti, and J.B. Holland. 2015. QTL mapping using high-throughput sequencing. P. 257-285. In: J. Alonso and A.N. Stepanova (Eds.) Methods in Molecular Biology. Plant Functional Genomics: Methods and Protocols. Springer, New York.

 

Holland, J.B., G.I. Graham, J.P. Murphy, and M.L. Senior. 2015. Charles W. Stuber: Maize geneticist and pioneer of marker-assisted selection. Plant Breeding Reviews 39:1-22.

 

Goodman, M.M., J.B. Holland, and J.J. Sánchez González. 2014. Breeding and genetic diversity. p. 14–50 In: R. Wusirika, M. Bohn, J. Lai, and C. Cole (Eds.) Genetics, Genomics and Breeding of Maize. CRC Press, Boca Raton, FL.

 

Holland, J.B. 2014. Breeding: Plants, Modern. p. 187-200. In: N.K. Van Alfen (Ed.) Encyclopedia of Agriculture and Food Systems, Vol. 2. Elsevier, New York.

 

Sood, S., S.A. Flint-Garcia, M.C. Willcox, and JB. Holland. 2014. Mining natural variation for maize improvement: Selection on phenotypes and genes. p. 615 – 649 In: R. Tuberosa, A. Graner, and E. Frison (Eds.), Advances in Genomics of Plant Genetic Resources, Springer, New York.

 

Glover, J.D., J.P. Reganold, L.W. Bell, J. Borevitz, E.C. Brummer, E.S. Buckler, C.M. Cox, T.S. Cox, T.E. Crews, S.W. Culman, L.R. DeHaan, D. Eriksson, B.S. Gill, J. Holland, F. Hu, B.S. Hulke, A.M.H. Ibrahim, W. Jackson, S.S. Jones, S.C. Murray, A.H. Paterson, E. Ploschuk, E.J. Sacks, S. Snapp, D. Tao, D.L. Van Tassel, L.J. Wade, D.L. Wyse, Y. Xu. 2010. Perennial questions of hydrology and climate – Response. Science 330:33.

 

Glover, J.D., J.P. Reganold, L.W. Bell, J. Borevitz, E.C. Brummer, E.S. Buckler, C.M. Cox, T.S. Cox, T.E. Crews, S.W. Culman, L.R. DeHaan, D. Eriksson, B.S. Gill, J. Holland, F. Hu, B.S. Hulke, A.M.H. Ibrahim, W. Jackson, S.S. Jones, S.C. Murray, A.H. Paterson, E. Ploschuk, E.J. Sacks, S. Snapp, D. Tao, D.L. Van Tassel, L.J. Wade, D.L. Wyse, Y. Xu. 2010. Increasing food and ecosystem security through perennial grains. Science 328:1638-1639.

 

Holland, J.B. 2009. Increasing yield. p. 469 – 482. In: S. Hake and J. Bennetzen (Eds.). Handbook of Maize: Its Biology. Springer, NY.

 

Hawk, J.A., M. Jumbo, T. Weldekidan, and J.B. Holland. 2008. Comparison of conventional, modified single seed descent, and doubled haploid breeding methods for maize inbred line development using GEM breeding crosses. p. 16 – 25. In: S.P. Moose (ed.) Proceedings of the 44th Illinois Corn Breeders’ School. University of Illinois, March 2 – 4, 2008, Urbana, IL.

 

Holland, J.B., and A.J. Cardinal. 2008. Harnessing quantitative genetics and genomics for understanding and improving complex traits in crops. p. 123 – 136. In: R. Serraj, J. Bennett & B Hardy (Eds). Drought-Frontiers in Rice: Crop Improvement for Increased Rainfed Production. World Scientific Publishing, Singapore.

 

Starr, M.R., L.A. Robertson-Hoyt, G.A. Payne, and J.B. Holland. 2006. Improving resistance to fumonisin contamination in maize. p. 83-92. In: S.P. Moose (ed.) Proceedings of the 42nd Illinois Corn Breeders’ School. University of Illinois, Urbana, IL.

 

Holland, J.B. 2006. Theoretical and biological foundations of plant breeding. p. 127-140 In: (K.R. Lamkey and M. Lee, eds.) Plant Breeding: The Arnel R. Hallauer International Symposium. Blackwell Publishing, Ames, IA.

 

Robertson, L.A., G.A. Payne, and J.B. Holland. 2005. Marker assisted breeding for host resistance to mycotoxin contamination. p. 423-435 In: H.K. Abbas (ed.) Aflatoxin and Food Safety. CRC Press, Boca Raton, FL.

 

Holland, J.B. 2004. Implementation of molecular markers for quantitative traits in breeding programs – challenges and opportunities. In: T. Fischer et al. (ed.) New directions for a diverse planet: Proceedings for the 4th International Crop Science Congress, Brisbane, Australia, 26 September – 1 October 2004. Online: http://www.cropscience.org.au/icsc2004/

 

Holland, J.B. 2004. Breeding: Incorporation of exotic germplasm. p. 222-224 In: R.M. Goodman (ed.) The Encyclopedia of Plant and Crop Science. Marcel Dekker, NY

 

Holland, J.B. 2001. Enhancing disease resistance of crops through breeding and genetics. p. 60-83. In: R. F. Wilson, C.T. Hou, and D.F. Hildebrand (ed.) Dealing with Genetically Modified Crops. Amer. Oil Chem. Soc. Press. Champaign, IL.

 

Holland, J.B. 1997. Oat improvement. p. 57-98 In M.S. Kang (ed.) Crop Improvement: A 21st Century Perspective. Research Signpost, Trivandrum, India.

Jim Holland